PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678293190
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 310aa    MW: 33843.3 Da    PI: 6.8181
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678293190genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.92.9e-122751226
               -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
               +++ Cr+f+rtGtC yG +C+F+H+
  678293190 27 GESDCRYFLRTGTCAYGKNCRFNHP 51
               7899********************8 PP
2zf-CCCH36.86.6e-127094327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ C+++++tGtCkyG+ CkF+H++
  678293190 70 EPDCDYYLKTGTCKYGAGCKFNHPK 94
               789********************96 PP
3zf-CCCH34.34e-11114137427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C+f+++tG C+yG  CkF+H++
  678293190 114 KPCPFYMQTGVCRYGYACKFHHPQ 137
                69********************97 PP
4zf-CCCH28.62.4e-09207230326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +Cr+f   GtCkyG++C++ H+
  678293190 207 KQECRYFISHGTCKYGSNCRYDHP 230
                578********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.8592553IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-52552IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-102751IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-62952IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-63150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3146795IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-46794IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-97094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-67296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-57394IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7109137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037110138IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-5110137IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-9114137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5114136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319204232IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4205231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7206235IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-7207230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5210236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRSSTNDTV DGSQFTYVSG MYPGRPGESD CRYFLRTGTC AYGKNCRFNH PSGTDHGIAY  60
TLEFPERAGE PDCDYYLKTG TCKYGAGCKF NHPKDKQPGV WMNTLGLPMR QDAKPCPFYM  120
QTGVCRYGYA CKFHHPQPLS APILFPVPLT CTSLHQWHSY PSAFIYPSQE WGLYMGNLWP  180
SPASHIVTAQ ASDGNISSND LPQRPDKQEC RYFISHGTCK YGSNCRYDHP VGRMRQPSSV  240
PVASPGLSSG PGREPSTTPS SEPPEAADTS DLNKASTGSG DDEPPKGGKS PDRSDSFPDS  300
SAASNQNDSD
Cis-element ? help Back to Top
SourceLink
PlantRegMap678293190
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085489.15e-83zinc finger CCCH domain-containing protein 33 isoform X2
TrEMBLA0A4D8XVR18e-81A0A4D8XVR1_SALSN; Uncharacterized protein
STRINGMigut.H01247.1.p6e-75(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-60C3H family protein