PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678293194
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-other
Protein Properties Length: 269aa    MW: 30698.8 Da    PI: 5.0846
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678293194genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.31.9e-062242512754
                HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  27 aeereeLAkklgLterqVkvWFqNrRak 54 
                +e++++LA+++gL+ +q+ +WF N+R +
  678293194 224 EEDKAKLAEETGLQLKQINNWFINQRKR 251
                67899*********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-155094IPR005540KNOX1
PfamPF037905.8E-155193IPR005540KNOX1
SMARTSM012561.9E-26105160IPR005541KNOX2
PfamPF037911.1E-19110159IPR005541KNOX2
Gene3DG3DSA:1.10.10.601.0E-14201255IPR009057Homeodomain-like
SMARTSM003890.0058203259IPR001356Homeobox domain
SuperFamilySSF466893.85E-8221258IPR009057Homeodomain-like
PfamPF059205.2E-11224251IPR008422Homeobox KN domain
PROSITE profilePS500719.394224255IPR001356Homeobox domain
CDDcd000861.63E-6226254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRLCFLRQER NTTLSDQRGF YFMQEQVMSM VGSRAGVSDA PVIVSGELHH QMKAEIAAHP  60
LFEELLGMHV ACLRVATPID QLPILDAQIS QSHQILTYYA QRASSASTPD ENQELDNFMA  120
QYMLVLCSFR EQLQQHVRVH AVEAVMACRE IEQNLQSLTG ETIGEEMGAT MSDNEGETQM  180
DLSFEQANSD VHDLMGFGPL LPTESERLLM ERVKQELKVE LKEEEDKAKL AEETGLQLKQ  240
INNWFINQRK RNWHGISQTS TSLKSKRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248268RKRNWHGISQTSTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678293194
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072032.11e-124homeobox protein HD1
SwissprotQ9FPQ81e-104KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A2G9GA691e-120A0A2G9GA69_9LAMI; Transcription factor MEIS1
STRINGGorai.003G163800.11e-112(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.12e-84KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]