PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678294422
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family DBB
Protein Properties Length: 192aa    MW: 21009.6 Da    PI: 6.11
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678294422genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++lfC  ++  lC++C ++ H
  678294422  4 LCDVCESSAAILFCAADEAALCRSCDDKVH 33
               7******99*****************9998 PP
2zf-B_box279.4e-095391337
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                ++C+ +e+ ++ ++Ce +++ lC +C  + H g    H
  678294422 53 VPRCDICESAPAFFYCEIDGSSLCLQCDINVHVGgkrtH 91
               689***************************996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.125147IPR000315B-box-type zinc finger
CDDcd000212.10E-6345No hitNo description
PfamPF006433.7E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501198.6035196IPR000315B-box-type zinc finger
SMARTSM003363.6E-115196IPR000315B-box-type zinc finger
PfamPF006432.8E-65391IPR000315B-box-type zinc finger
CDDcd000212.02E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRTLCDVCES SAAILFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLAEP SAVPRCDICE  60
SAPAFFYCEI DGSSLCLQCD INVHVGGKRT HGRYLLMRQR VEFPGDKAGS VEGGASQRVQ  120
NMNEPKKEPA QASGLRLNEN QPNLRFSPER SLAENANNDG KIAGNLFDLN ARPPRTQMQD  180
QSNQGQGNPE EQ
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678294422
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088488.12e-92B-box zinc finger protein 19
RefseqXP_020551620.12e-92B-box zinc finger protein 19
RefseqXP_020551621.12e-92B-box zinc finger protein 19
RefseqXP_020551622.12e-92B-box zinc finger protein 19
SwissprotC0SVM51e-67BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2G9G0M33e-89A0A2G9G0M3_9LAMI; Uncharacterized protein
STRINGXP_002512996.11e-86(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-70DBB family protein