PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678294623

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 254aa MW: 28262.4 Da PI: 6.6674

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678294623	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.8	3e-18	9	58	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i++ ++ qvtfskRr+ ++ KA+E+ v Cd++va i fs++g++ ys+ 678294623 9 KIDDATKCQVTFSKRRTSLIRKAHEIAVCCDVDVAFIAFSPSGRITKYSN 58 79********************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.404	1	60	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.8E-20	1	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-16	2	22	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.57E-19	3	65	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-18	9	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-16	22	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.8E-16	37	58	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGRKIEIEKI DDATKCQVTF SKRRTSLIRK AHEIAVCCDV DVAFIAFSPS GRITKYSNRK 60 RHALTSSGYS NKVRESLMHS LVEKGAGYHG RNQDQWRPDA HVYATNEDLH TSNLGCLEPY 120 DVHHQQSNAS ATFACNFQVP GSEAEFSPAP EPLPAIGNPI FLDTSPCGVA HFVDRGTRPR 180 DNADFSGAMS AISSTPNPQP RAHSQTEPLY LAKLACSTLW MSRAGDLSEW DTTFRDDNSL 240 WFDSSRNELN QVLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678294623

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3785	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	6e-18	AGAMOUS-like 66