PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678295324
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YC
Protein Properties Length: 242aa    MW: 26384 Da    PI: 4.6512
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678295324genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.21.5e-121693098
      NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
               ++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++++v++ ++fdfl ++v +
  678295324  1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVNSLHLKQCVQSYNVFDFLKEVVSK 69
               899*************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.2E-13154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-18168IPR009072Histone-fold
SuperFamilySSF471131.57E-19171IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLQR GAKTVNSLHL KQCVQSYNVF  60
DFLKEVVSKV PDFTNSDGAA DPSKRRRVVS NETNGSDEEL KRGITQETCH TTGAVRGRGR  120
GRGRGRGRAS RATEREPPHT EAEAVSTATH PSTKFTANPD NESKIDDSTE YTKAPGSRNF  180
DLNAQVDDGS GKMACTSAAA AAASSEDFPA LSEIDRMPID TLHIMQAGSR PEEEEEDYDE  240
EV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KRRRV
2117127RGRGRGRGRGR
3119128RGRGRGRGRA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678295324
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553014.13e-81dr1-associated corepressor-like isoform X2
TrEMBLA0A2G9GZU21e-85A0A2G9GZU2_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1)
STRINGMigut.N01867.1.p3e-77(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79602230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-52nuclear factor Y, subunit C11