PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678296273
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 590aa    MW: 63565.6 Da    PI: 6.4163
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678296273genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30245304159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  678296273 245 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSsSCPVRKQVQRCADDMSILITTYEGTHNHP 304
                58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31231306IPR003657WRKY domain
SuperFamilySSF1182903.01E-27238306IPR003657WRKY domain
PROSITE profilePS5081128.908240306IPR003657WRKY domain
SMARTSM007746.8E-36245305IPR003657WRKY domain
PfamPF031067.4E-27246304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MESKASESCN GDDSSSLEDI GLLVGVGETK LEDELIKQES TKQKSFIFGT NQAQLQRKTE  60
RSSPESESRS SSSTKRKKLD DKLESTKAEM DQVMEENQRL RMYLDRIIKD YKTLEVRYMD  120
IVGQETMRRP SGNDEPDDLI ALSLGRASTE KTKDECRKTT AKKDDDSAGD DREALRLGLD  180
CKFDTPQRYP DPTTPERSVE EVKEDLAGDK CPEKTTKGTD DEGLQQNPIK RARVSVKIRC  240
DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR CTVSSSCPVR KQVQRCADDM SILITTYEGT  300
HNHPLPIAAT AMASTTSAAA SMLMSGSSSS TAGQTPAAAA GLNGLNFYLS DSSRSNPFYI  360
PNSSISTSPS YPTITIDLTS SSSSSSSSSS RMGNAFAPRY STTNLNFSTL DSNPLPLTWS  420
DGMLSYGAHE PLTKPPQSVD ANPMSLGHHS QDSLFHSYLQ KAVQTQRQQS LWPDTVAAAT  480
KAITADPSFQ SALAAALTSI IGSNGGAAGS LTSQISGDRS NLTNGVKASE PFPILSSYPS  540
STSAGNKCSL SFLSKPSPPS GAPPAGVMLI PPTMPASKSN PPHDNRDPSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202453061777Probable WRKY transcription factor 4
2lex_A2e-202453061777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678296273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071617.10.0probable WRKY transcription factor 72
TrEMBLA0A2G9G0I20.0A0A2G9G0I2_9LAMI; Uncharacterized protein
STRINGVIT_17s0000g05810.t011e-146(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.14e-60WRKY DNA-binding protein 61