PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678296988
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YA
Protein Properties Length: 194aa    MW: 21319.6 Da    PI: 9.7703
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678296988genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.3e-32112168158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RR +Rak+e+ekkl +ksrkpylheSRh hAlrR+Rg+gGrF
  678296988 112 EEPVFVNAKQYHGILRRRRSRAKAESEKKL-SKSRKPYLHESRHLHALRRARGTGGRF 168
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-34110171IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.736111171IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27113168IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.7E-23114136IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860116136IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.7E-23145168IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MTSSIHSLSD NSEANEQQKN TASDSQNSSP INGASLPSIG SPAMHYAGPP QLGVGNVQAA  60
YPYPDPYYRS IFAPYDAQSY AAQPYPIQPM VHVQLMGMQQ AGGVPLPSDS VEEPVFVNAK  120
QYHGILRRRR SRAKAESEKK LSKSRKPYLH ESRHLHALRR ARGTGGRFQK KSENQETSDN  180
SQDNRGKAPL EDAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-20111168158NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678296988
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096682.11e-96nuclear transcription factor Y subunit A-7-like isoform X6
SwissprotQ84JP12e-55NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A022PWC74e-91A0A022PWC7_ERYGU; Uncharacterized protein
STRINGMigut.M01893.1.p3e-91(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66502333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-45nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]