PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678297159

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

MYB

Protein Properties

Length: 240aa MW: 27197.5 Da PI: 8.7585

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678297159	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	25	70	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT+eE +++ +a ++ + +W ++a ++ g++ ++ + ++ 678297159 25 TWTKEENKKFENALALVDEKhpnRWFLVADFIP-GKSVLDVMNQYRV 70 6***********8766666666*****.*******9986 PP
2	Myb_DNA-binding	40.6	5.9e-13	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + +++G+g+W++I+r +t+ q+ s+ qky 678297159 122 PWTEDEHRRFLLGLEKHGKGDWRSISRNYVISKTPTQVASHAQKY 166 8***************************789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.867	21	76	IPR017884	SANT domain
SMART	SM00717	6.6E-7	22	74	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.92E-10	24	77	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-6	25	70	IPR001005	SANT/Myb domain
CDD	cd00167	6.42E-7	25	71	No hit	No description
PROSITE profile	PS51294	16.678	115	171	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-15	117	171	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-10	119	169	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-10	119	165	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-17	119	169	IPR006447	Myb domain, plants
CDD	cd00167	1.01E-8	122	166	No hit	No description
Pfam	PF00249	2.8E-11	122	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDMESLPSLL TNSGWPMWQS SSGTTWTKEE NKKFENALAL VDEKHPNRWF LVADFIPGKS 60 VLDVMNQYRV LAADVRDIEK GLFPIPGDLA SSFTLGATDN RSFHVYAKRA RAGDQERRKG 120 VPWTEDEHRR FLLGLEKHGK GDWRSISRNY VISKTPTQVA SHAQKYYLRR NSGNKDRKRP 180 SIHDITIVDE PRVSEIGSTS EGPSITTKIE MEWDQSAEGG IVVLNSTGYP NQLIAWSQGY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678297159

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076737.1	6e-91	transcription factor DIVARICATA-like
Refseq	XP_011076738.1	6e-91	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	3e-65	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A1S3YFH9	1e-86	A0A1S3YFH9_TOBAC; transcription factor DIVARICATA-like
TrEMBL	A0A1U7W9M1	1e-86	A0A1U7W9M1_NICSY; transcription factor DIVARICATA-like
STRING	XP_009776702.1	2e-87	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	7e-72	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]