PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678298213

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 310aa MW: 33864.9 Da PI: 8.7722

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678298213	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	83	143	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s 678298213 83 KEQALNCPRCHSTNTKFCYYNNYSLSQPRYFCKNCRRYWTEGGSLRNVPVGGGSRKNKRCS 143 68999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	76	141	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-33	85	141	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	87	141	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	89	125	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MTIPQKSPMT DAAQQQQQTF ASEFQIPSSS SSSSFTSTKH LCSTTIGILV FCHQGIEGLV 60 VRPVETAEAQ KPVLVEKKPR PPKEQALNCP RCHSTNTKFC YYNNYSLSQP RYFCKNCRRY 120 WTEGGSLRNV PVGGGSRKNK RCSSSSSTTA SSSKKLVQDL NPQPSFLSAN PKIQHGHDLN 180 LAYSLNPFLP EFPFGLDVKT MNNTSSSKAT HLSSLDLLKP VTFTSGQSST FMADNSSNNS 240 NVYCSSLPVH DLKSGLGFSL DGLNQNVYGG SPSSRLLFPF DELKPVSSAN EFGRDEATGY 300 WNGVLDGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678298213

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022844511.1	7e-78	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q8LAP8	1e-43	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A2Z7A7F5	4e-75	A0A2Z7A7F5_9LAMI; Uncharacterized protein
STRING	Gorai.004G122800.1	1e-73	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	5e-43	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]