PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299059
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 256aa    MW: 29193.6 Da    PI: 7.6653
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299059genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1978131356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++  eq+++Le+ Fe  ++++ e++++LA+ lgL+ rqV +WFqNrRa++k
  678299059  78 KKRRLDMEQVKTLERSFELGSKLDPERKTQLARDLGLQPRQVAIWFQNRRARWK 131
                4557899**********************************************9 PP
2HD-ZIP_I/II123.59.9e-4077167191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl  eqvk+LE+sFe  +kL+perK++lar+Lglqprqva+WFqnrRAR+ktkqlEk+y+ Lkr+++a ++en++L++++ +L++e+
    678299059  77 EKKRRLDMEQVKTLERSFELGSKLDPERKTQLARDLGLQPRQVAIWFQNRRARWKTKQLEKNYNLLKRQVEAARAENDALRAQNLKLHAEI 167
                  69*************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.31373133IPR001356Homeobox domain
SuperFamilySSF466893.47E-1973135IPR009057Homeodomain-like
SMARTSM003892.0E-1976137IPR001356Homeobox domain
PfamPF000469.8E-1778131IPR001356Homeobox domain
CDDcd000862.22E-1678134No hitNo description
Gene3DG3DSA:1.10.10.602.0E-1980140IPR009057Homeodomain-like
PRINTSPR000316.0E-6104113IPR000047Helix-turn-helix motif
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PRINTSPR000316.0E-6113129IPR000047Helix-turn-helix motif
PfamPF021839.7E-9133173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGFFHPNFML QLQFSHDDAA AADIHRPSYI SPAPILPHGF LDGKRSSSMR YENGAGLYEE  60
TKRNSNGEDE LSDDGGEKKR RLDMEQVKTL ERSFELGSKL DPERKTQLAR DLGLQPRQVA  120
IWFQNRRARW KTKQLEKNYN LLKRQVEAAR AENDALRAQN LKLHAEILVL NNMGKTEMAN  180
PNRGTEESSS NRTENSSETK IEISRNPAIE SRLSAELYGS RIGQVVKEGS SSFYCSTFCG  240
VDEQGILWPW GEHRFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299059
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.18e-88homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC033e-64ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2G9GFL13e-85A0A2G9GFL1_9LAMI; Transcription factor HEX
STRINGVIT_01s0026g01950.t011e-81(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-58HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]