PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678299155

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 211aa MW: 22704.8 Da PI: 6.7363

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678299155	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.5	4.3e-28	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C++dC+l+p++ p++q+++ +++k++G++ +++l++a p++ ++++++sl+yeA+ r+ +Pv Ga+g++ ++++ +q++++++ 678299155 2 SCNGCRVLRKGCSPDCTLRPCLdwipsPESQANAVVFLAKFYGRAGLVNLINAGPDHLHPEIFKSLLYEACGRIINPVGGATGLMGSGEWARCQAAVDAV 101 6**********************9999****************************************************************99988 PP DUF260 96 llk 98 l + 678299155 102 LEG 104 765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.368	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-22	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSCNGCRVLR KGCSPDCTLR PCLDWIPSPE SQANAVVFLA KFYGRAGLVN LINAGPDHLH 60 PEIFKSLLYE ACGRIINPVG GATGLMGSGE WARCQAAVDA VLEGSSLMME EISEDAHSEG 120 LRRDPVKSCN IRRIKRSPAS SSAAENPTID VPEKFTITGW EGRGDDSPSP SPGNVRKPRR 180 NPTTAPASRL PDEVPSPDLG LELTLSWPKN V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678299155

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097963.1	8e-67	LOB domain-containing protein 40-like
Refseq	XP_027100762.1	9e-67	LOB domain-containing protein 40-like
Refseq	XP_027154651.1	9e-67	LOB domain-containing protein 40-like
Swissprot	Q9M886	3e-58	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A068TWE6	2e-65	A0A068TWE6_COFCA; Uncharacterized protein
STRING	XP_009777707.1	2e-63	(Nicotiana sylvestris)
STRING	XP_009586694.1	2e-63	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-60	LOB domain-containing protein 41