PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299172
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 142aa    MW: 14939.5 Da    PI: 8.4787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299172genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000212540116
               EEETTTTEEESSHHHH CS
    zf-C2H2  1 ykCpdCgksFsrksnL 16
               y+C+ Cg+sF++   L
  678299172 25 YRCGVCGRSFPTYQAL 40
               9**********98877 PP
2zf-C2H213.30.000256789123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F++   L  H r+H
  678299172 67 HECSICHKDFPTGQALGGHKRKH 89
               78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.64E-72152No hitNo description
PROSITE profilePS5015711.6552552IPR007087Zinc finger, C2H2
PfamPF139124.1E-112548IPR007087Zinc finger, C2H2
SMARTSM003550.0412547IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-56491No hitNo description
PfamPF139127.5E-126791IPR007087Zinc finger, C2H2
SMARTSM003550.146789IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0586789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MAVDAAAAEW WASQTGNDVY DDQKYRCGVC GRSFPTYQAL GGHKTCHSNR KKSAVGVDPA  60
GKSRRGHECS ICHKDFPTGQ ALGGHKRKHY DRAVGGKVSS DGSGTSTVSY SGDGSYSGGA  120
VGKDFDLNLA PTPDLELKIS LG
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092508.12e-27zinc finger protein AZF2-like
SwissprotQ424306e-25ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2Z7BFJ94e-29A0A2Z7BFJ9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-21C2H2 family protein