PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678299647
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 208aa    MW: 22888.5 Da    PI: 8.2171
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678299647genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.85.9e-231663249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               +ie k+n qvtfskRr+g++KKA+EL++LC++e+a+++fs+  k++ +
  678299647 16 KIEAKTNLQVTFSKRRAGLFKKASELCTLCGVEIAIVVFSPAKKIFSF 63
               79****************************************999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.46767IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-31766IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-27879IPR002100Transcription factor, MADS-box
CDDcd002653.06E-33876No hitNo description
PRINTSPR004047.9E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241663IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAKKPSLGRR KIKIAKIEAK TNLQVTFSKR RAGLFKKASE LCTLCGVEIA IVVFSPAKKI  60
FSFGHPEVRP IVDRFLARNT ETGCLAGNDG GGIFELNAHL DQILDEVEME KERGQVLEKM  120
RRSGGGYWWE EPVEKLGLQE VEQLRDAMEE LRKKVGETAA RIAAFDPYEL AFLGNPAAIG  180
LGSAAAAKAH LDPINENLGF LHGFFCGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-15781171Myocyte-specific enhancer factor 2B
1tqe_Q7e-15781171Myocyte-specific enhancer factor 2B
1tqe_R7e-15781171Myocyte-specific enhancer factor 2B
1tqe_S7e-15781171Myocyte-specific enhancer factor 2B
6c9l_A7e-15781171Myocyte-specific enhancer factor 2B
6c9l_B7e-15781171Myocyte-specific enhancer factor 2B
6c9l_C7e-15781171Myocyte-specific enhancer factor 2B
6c9l_D7e-15781171Myocyte-specific enhancer factor 2B
6c9l_E7e-15781171Myocyte-specific enhancer factor 2B
6c9l_F7e-15781171Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678299647
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088151.11e-71agamous-like MADS-box protein AGL62
SwissprotQ4PSU48e-51AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLS8D0Q86e-82S8D0Q8_9LAMI; Uncharacterized protein
STRINGXP_009761267.19e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-48AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]