PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678300923
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 214aa    MW: 24430 Da    PI: 10.1876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678300923genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++++ +G g W++++ + g++R++k+c++rw++yl
        678300923 10 KGAWTKEEDALLRKCIEIHGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding49.59.5e-1663107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r  +T++E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++
        678300923  63 RSCFTEDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDVKNFWNSH 107
                      6789******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.965561IPR017930Myb domain
SuperFamilySSF466892.35E-287104IPR009057Homeodomain-like
SMARTSM007175.1E-15959IPR001005SANT/Myb domain
PfamPF002495.8E-161057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-211164IPR009057Homeodomain-like
CDDcd001673.30E-111257No hitNo description
SMARTSM007178.1E-1562110IPR001005SANT/Myb domain
PROSITE profilePS5129418.93362112IPR017930Myb domain
PfamPF002492.4E-1463107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2265112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKEVRGLRK GAWTKEEDAL LRKCIEIHGE GKWHLVPLRA GLNRCRKSCR LRWLNYLRPD  60
INRSCFTEDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDV KNFWNSHVHK RLSTGDGSKT  120
CSYKTQKAVV IRPRAMRLSR AQEPRTPSNH MGVGTREAEA RAEVDRESLS WWSELLGMME  180
SGFEDRVGAY PRTPAGTSTE IDLGLFSSSM LEDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2481145110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678300923
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100106.11e-65transcription factor MYB90-like
SwissprotQ9FNV94e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1S3ZX052e-63A0A1S3ZX05_TOBAC; transcription factor MYB114-like
TrEMBLC1JAC92e-63C1JAC9_TOBAC; Anthocyanin 2
TrEMBLC1JAD02e-63C1JAD0_NICTO; Anthocyanin 2
STRINGXP_009605381.14e-64(Nicotiana tomentosiformis)
STRINGXP_009627993.14e-64(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.17e-55myb domain protein 114
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]