PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678301053
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 255aa    MW: 27453 Da    PI: 8.5897
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678301053genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1024e-324096360
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                  v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+++al+C+AC CHRnFHR+eve e
    678301053 40 LVKYRECLKNHAAAMGGNATDGCGEFMPS-GEEGSIEALTCSACSCHRNFHRKEVEGE 96
                 689*************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-264199IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.0E-294193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.7E-314293IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4714392IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.68E-19168239IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-31170241IPR009057Homeodomain-like
TIGRFAMsTIGR015658.5E-27181237IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MASSVGGGGG GAAGPQIPTN GAAPLAAVED LHHQHHFKKL VKYRECLKNH AAAMGGNATD  60
GCGEFMPSGE EGSIEALTCS ACSCHRNFHR KEVEGEITSN PCETCFHTVN PRIGVGGRKL  120
FMGHPQAIGY HGGTLISARA VAPHQMIMPY SVGASLPSES EDQDDGGGGG MSGGRPSQLA  180
KKRFRTKFTQ EQKDKMLSFA EKVGWKIQKQ EEGVVQQFCQ EVGVKRRVLK VWMHNNKHSL  240
SSKKNPEPNP DQNHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241822391875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678301053
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003633412.11e-108PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-76ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLF6HJZ61e-106F6HJZ6_VITVI; Uncharacterized protein
STRINGVIT_12s0035g01880.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.27e-78homeobox protein 31