PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678301096

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 173aa MW: 18906.2 Da PI: 7.4619

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678301096	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.4	8e-46	19	117	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dCv+apyfpa+qp+kfa vhk+FGasnv k+l+++pe++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+++lal+++ 678301096 19 PCAACKLLRRRCAQDCVFAPYFPADQPNKFATVHKVFGASNVNKMLQEIPEHTRGDAVSSLVYEANARIRDPVYGCVGAISSLQQQIEVLQTQLALAQA 117 7**********************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.162	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-45	19	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKDSSSSSGR KQQQQSVSPC AACKLLRRRC AQDCVFAPYF PADQPNKFAT VHKVFGASNV 60 NKMLQEIPEH TRGDAVSSLV YEANARIRDP VYGCVGAISS LQQQIEVLQT QLALAQATAV 120 QMHIRQVSAS FANSPEHLNS SPSSSEAAIS HQANSIFSME MLNDQANMDA FWN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-46	18	112	10	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-46	18	112	10	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678301096

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090495.1	1e-83	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	3e-59	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	G7JIR8	7e-79	G7JIR8_MEDTR; LOB domain protein
STRING	AES90058	1e-79	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-56	LOB domain-containing protein 4