PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678301651

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 219aa MW: 23825.3 Da PI: 5.9035

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678301651	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	21	44	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C C+++Fs+ L H+++ H 678301651 21 HVCRECDRRFSSGKALGGHMSRtH 44 79*******************988 PP
2	zf-C2H2	18.7	4.6e-06	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++C+++F+++ +L+ H+r+H 678301651 71 VCNICHRVFNSRKSLHGHMRSH 92 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.12E-6	20	92	No hit	No description
SMART	SM00355	0.059	21	44	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	21	49	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.6E-9	21	44	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	44	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0097	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.452	70	92	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.0E-4	71	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.0E-7	72	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MKNLDEVQGS FDLGGEPSES HVCRECDRRF SSGKALGGHM SRTHAQGDDG RQKKRKLKIL 60 GRRDDSDEAA VCNICHRVFN SRKSLHGHMR SHPDRPWRGM DPEPKPASEA RSQMNDIDRI 120 DMIAAELLVN MRLGYYSTDS TVAGSSDESD SAGGVNSRIE TDTKAKKLDS CSSSLEADGY 180 LARVTAGDNL TAACGSTKFV IDLNVQASPE GGDSEDSFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	62	KKRKLKILGRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678301651

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2050	22	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	9e-18	C2H2 family protein