PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678302464
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family BBR-BPC
Protein Properties Length: 305aa    MW: 33486.1 Da    PI: 9.6814
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678302464genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind267.28.7e-82163057301
  GAGA_bind   7 re.rnkgyyepa.aslkenlglqlmssiaerdakirernla..lsekkaavaerd..maflqrdkalaernkalverdnkllalllvensla..salpvg 98 
                ++ rn+g+ +p   + k+++glq++   +      +e   +  +++ +a   +      ++  + ++++       +++k+++++  +n      ++p++
  678302464  16 MNfRNWGFLHPPsMTHKSHIGLQMVVEKPLFGGVAHETLPSilMASANARQFHNPmpDFHVPAEYWMNH------SKEDKYTNVVSGNNIPFdcYHQPPS 109
                556999988877577788999998776653333334432220022333322333321233455667777......99****9999866654478999*** PP

  GAGA_bind  99 vqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197
                 + + +t+s +s     + +q ++ a+    e+  +++ i+++a  + ++++   ++++ ++ +kk+kk+++++    ++  ++   +rs+ + k  +++
  678302464 110 FGLSLETSSSHSAYAPVHpHQPKNVAAACGIEDVASEQDISSSAAANGRVEM---KRSGGDKAHKKEKKPRNRT---PRSDPTPI--HRSRIPGKAAEIT 201
                ********99999985552555555555666777777777765555444444...3455555556666666633...23444555..79*********** PP

  GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
                +ng+++++s lP+PvC+CtG++r CY+WG+GGWqSaCCtt +S yPLP+stkrrgaRiagrKmS gafkk+LekL++eGyd+s+p+DL+++WAkHGtnkf
  678302464 202 INGITMNISELPIPVCTCTGTPRPCYRWGSGGWQSACCTTCLSLYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLSSEGYDFSTPIDLRSYWAKHGTNKF 301
                **************************************************************************************************** PP

  GAGA_bind 298 vtir 301
                vtir
  678302464 302 VTIR 305
                ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.3E-951305IPR010409GAGA-binding transcriptional activator
PfamPF062173.3E-8014305IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDGDGTGDPR NVAAGMNFRN WGFLHPPSMT HKSHIGLQMV VEKPLFGGVA HETLPSILMA  60
SANARQFHNP MPDFHVPAEY WMNHSKEDKY TNVVSGNNIP FDCYHQPPSF GLSLETSSSH  120
SAYAPVHPHQ PKNVAAACGI EDVASEQDIS SSAAANGRVE MKRSGGDKAH KKEKKPRNRT  180
PRSDPTPIHR SRIPGKAAEI TINGITMNIS ELPIPVCTCT GTPRPCYRWG SGGWQSACCT  240
TCLSLYPLPM STKRRGARIA GRKMSIGAFK KVLEKLSSEG YDFSTPIDLR SYWAKHGTNK  300
FVTIR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678302464
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083223.11e-109protein BASIC PENTACYSTEINE2-like
TrEMBLA0A2G9HQ941e-108A0A2G9HQ94_9LAMI; Uncharacterized protein
STRINGXP_009761371.12e-82(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100482026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-68basic pentacysteine1