PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678302982

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 241aa MW: 26542.6 Da PI: 6.7503

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678302982	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F ++ L H++ H 678302982 84 FSCNYCGRKFYSSQALGGHQNAH 106 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.33E-7	81	111	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.2E-4	82	110	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.383	84	111	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	86	106	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSPNVIMESE DESEASSQVF SSSASVKEEN KMLLNDSNPK QEATNPLKLD LTLGMTMPEA 60 EPKYSGKDSS PTDDHHPARP SRVFSCNYCG RKFYSSQALG GHQNAHKRER SIAKRAIRFG 120 MVSERYTTLP SLPIHGVPFR SLGVDAHGSV HQPALQTYED PNMHWIRKGG TFPQHHDHHI 180 GVPQYMECDD YEVSWPGSFR QAGGLLENAG LNSHHGCSVI TVVSTTSPTA SSSIPDLNLK 240 L

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678302982

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768278.1	6e-67	PREDICTED: zinc finger protein 4-like
Refseq	XP_016488606.1	6e-67	PREDICTED: zinc finger protein 4-like
TrEMBL	A0A1S4BIB6	1e-65	A0A1S4BIB6_TOBAC; zinc finger protein 4-like
TrEMBL	A0A1U7VPF6	1e-65	A0A1U7VPF6_NICSY; zinc finger protein 4-like
STRING	XP_009768278.1	2e-66	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	3e-33	zinc finger protein 4