PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678304985

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

YABBY

Protein Properties

Length: 150aa MW: 16759.2 Da PI: 10.4067

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678304985	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	154.4	9.8e-48	1	126	31	169
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsayn 130 +f++vtvrCGhC++llsvn+ + q l ++ +ll+++ + e v + s+s+ ++ ++ n + +p p irPPekrqrvPsayn 678304985 1 MFTIVTVRCGHCANLLSVNMGASLQPLHHLQE------FQLLKQQSMMEA----AVREGASSSKLTRFGSFHPNPPKMMP---PPIRPPEKRQRVPSAYN 87 699************999887776654443......223333333222....23333333334444344445555544...569********** PP YABBY 131 rfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 rfi+eeiqrika+nP+ishreafs+aaknWahfP+ hfg 678304985 88 RFIREEIQRIKANNPEISHREAFSTAAKNWAHFPHTHFG 126 ************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-52	1	126	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	64	121	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.8E-5	75	121	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MFTIVTVRCG HCANLLSVNM GASLQPLHHL QEFQLLKQQS MMEAAVREGA SSSKLTRFGS 60 FHPNPPKMMP PPIRPPEKRQ RVPSAYNRFI REEIQRIKAN NPEISHREAF STAAKNWAHF 120 PHTHFGDGNK QGKDHHLPVA GEAANGAFGC

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678304985

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	6e-63	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	6e-63	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	7e-56	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0X9RCW2	3e-62	A0A0X9RCW2_MENSP; YABBY family protein 2
STRING	Migut.D02379.1.p	8e-59	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-52	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]