PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678305895

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 346aa MW: 39403.1 Da PI: 4.1348

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678305895	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	36	8.9e-12	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i ++ r f kR++ + K A+ELSvLCd+ev +ii + g 678305895 11 IRSEKERRRAFQKRKKALEKSASELSVLCDVEVGMIIQDPFG 52 7778888899**************************965544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.2E-10	1	62	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.428	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-16	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.83E-18	2	78	No hit	No description
PRINTS	PR00404	3.4E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-12	11	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-8	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-8	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MGRAKLRMEL IRSEKERRRA FQKRKKALEK SASELSVLCD VEVGMIIQDP FGESNEPSVW 60 PPEPEVLERL IECYESRKGG YGSRTKTYHL SDLFKDQTEQ MTEKNNQDNH SVYDEGIGSL 120 SGGELECFVE LLKAKIDTAE RWIDTIMATQ AGNVTVQESR DVYPELWNPE SSCMFQFQPQ 180 ETQLVDLAVQ ESGDFYPEMW KSSDMVQFQP QETQPEAVMG FTVQESGNPY PEMWNLESSD 240 MIQYQPQETQ AGAVAGFTVQ ESGDLYPGMW NFGTPEVAWL QQQMRATQAV DAVSFPVQES 300 MDLHPAIWNF DSSGMLPFQP QMMLPHSSWP YCYDTGFLVG NDVALL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MGRAKLRMEL IRSEKERRRA FQKRKKALEK SASELSVLCD VEVGMIIQDP FGESNEPSVW  60
PPEPEVLERL IECYESRKGG YGSRTKTYHL SDLFKDQTEQ MTEKNNQDNH SVYDEGIGSL  120
SGGELECFVE LLKAKIDTAE RWIDTIMATQ AGNVTVQESR DVYPELWNPE SSCMFQFQPQ  180
ETQLVDLAVQ ESGDFYPEMW KSSDMVQFQP QETQPEAVMG FTVQESGNPY PEMWNLESSD  240
MIQYQPQETQ AGAVAGFTVQ ESGDLYPGMW NFGTPEVAWL QQQMRATQAV DAVSFPVQES  300
MDLHPAIWNF DSSGMLPFQP QMMLPHSSWP YCYDTGFLVG NDVALL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	25	KERRRAFQKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678305895

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.3	6e-12	M-type_MADS family protein