PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678306348
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 315aa    MW: 35967.4 Da    PI: 4.4679
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678306348genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33e-111152344
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
               i ++  r   f kR++ + K A ELSvLCd+ev +ii  + g
  678306348 11 IRSEKERRRAFQKRKKALEKSALELSVLCDVEVGMIIQDPFG 52
               7778888899**************************965544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-6162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.297147IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-7323IPR002100Transcription factor, MADS-box
CDDcd002661.84E-16575No hitNo description
SuperFamilySSF554557.59E-15578IPR002100Transcription factor, MADS-box
PfamPF003191.8E-111152IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGAKLRMEL IRSEKERRRA FQKRKKALEK SALELSVLCD VEVGMIIQDP FGESNEPSVW  60
PPEPEVLERL IECYESRNGG FGSRTKTYHL SDLFKDQTKQ MTKKNNHAKY SDYDERISSL  120
SGGELESFVE LLKAKIDTAE RWIDTIKATQ AGGVGNVTVQ ESRDVYPEMW NPESSEMFQF  180
QPQETQLVGF TVQESRDLYP EMWNLESSDM IQFQPQETQA GAVAGFTVQE SGDLYPGKRN  240
CGTPEVAWFQ QQMKATQAVD TVNFPVQESM DLHPAIWNFN SSDMPPFQPQ MMLPHSSWPY  300
CYDNGFLVGN DVALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11425KERRRAFQKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678306348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-12M-type_MADS family protein