PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678308089
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 259aa    MW: 27247.6 Da    PI: 10.0136
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678308089genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002184204121
                EEETTTTEEESSHHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                ++C  C++++s+++ L+ H +
  678308089 184 FRCWSCSEVYSSQHALVAHKN 204
                89*****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0776890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6196890IPR007087Zinc finger, C2H2
SuperFamilySSF576677.14E-76990No hitNo description
PfamPF139128.9E-57092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-47090IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.14E-7179203No hitNo description
PfamPF139120.033183203IPR007087Zinc finger, C2H2
SMARTSM00355130184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEINTTLGSL GIIPLSLASD AQQRDQPTGR SVGDGGGGGV GRGGGDGGGS GRRVARRKRD  60
TTSPKITPPC TECGKKFWSR KALCGHMRCH PERGWRGINP PPNFKRRSLW PSLTEEDREA  120
AAWLLLMANG NPDAAALEPR RSIRTAKMSS GSRSVTHGAN GVHGEEDGVG TTAGGGGGGA  180
VRRFRCWSCS EVYSSQHALV AHKNVTLCGG PGTPSAFPTA IKVEPPSTAG VFSENLEDSD  240
IVSRRNLYGG ITLDLRLGF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678308089
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027148744.16e-32zinc finger protein ZAT3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA638556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.13e-28C2H2-like zinc finger protein