PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678308531
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 254aa    MW: 28030.1 Da    PI: 8.9136
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678308531genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.76.5e-32999292
     DUF260  2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
               Ca+Ck++r+kC+++C++ap+fpa+++++f++vhk+FG+sn++kl+  l+++++++a++slv+eA ++ rdP +G +g +++l ++l++ k+
  678308531  9 CASCKHQRKKCTDKCAMAPHFPADRSREFRAVHKVFGVSNITKLVGGLSQDDQRRAVESLVWEAMCWHRDPRRGPYGEYQRLLEELRRCKS 99
               ***********************************************************************************99998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.1757108IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-30999IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MLHRGRSTCA SCKHQRKKCT DKCAMAPHFP ADRSREFRAV HKVFGVSNIT KLVGGLSQDD  60
QRRAVESLVW EAMCWHRDPR RGPYGEYQRL LEELRRCKSG YHQSLMISNG LGNSPFYPYG  120
YPHHHGYQEG RGARAEKETA PVMVTQVQPY MVGPGLSELM GHFCLKERWP LCAAGPLGFG  180
TRVWEGGKRK EGLDAGATGS GVAPVLGCLR SAGKSMAMLN AGVFLFCLLY FDSGCRALGI  240
DSQLASECHG DSAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-16710610112LOB family transfactor Ramosa2.1
5ly0_B1e-16710610112LOB family transfactor Ramosa2.1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678308531
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101771827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-33LOB domain-containing protein 2