PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678308706
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 268aa    MW: 30329.4 Da    PI: 9.109
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678308706genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.39.5e-126488327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               ++ Cr+++ tGtCk+G+ CkF+H++
  678308706 64 EPDCRYYMWTGTCKFGALCKFNHPK 88
               589********************96 PP
2zf-CCCH25.32.6e-081041211027
                GGTS--TTTTT-SS-SSS CS
    zf-CCCH  10 artGtCkyGdrCkFaHgp 27 
                ++tG Ck+G  CkF+H++
  678308706 104 RQTGMCKFGLACKFHHPQ 121
                58**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2586189IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-46288IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-96488IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-56589IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-46787IPR000571Zinc finger, CCCH-type
SMARTSM003565.8101121IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-5104121IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.399105122IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MQSRAVDDEG GKPEIRRHSP RKCSLLLAGS RRESKDMGVS LRNHDFFYGH GIIYAPDFPE  60
RAEEPDCRYY MWTGTCKFGA LCKFNHPKRR LLDLRLNDLG LPLRQTGMCK FGLACKFHHP  120
QPSSPAVFYP ALGLPGSWLA TAYFVASPFQ QTQSYMPIFG YPAQQPSIYM GKSWPSCASF  180
VVTAPAYYHP QQCCRTECQR PVSHGIRACR FRSNYKYEHP SEKTLQRTSL QRAESSPPSS  240
QIPPVNNTPD TNGTTVRNAN MIASEHDQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678308706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-16zinc finger nuclease 2