PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309177

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HD-ZIP

Protein Properties

Length: 163aa MW: 18881.1 Da PI: 6.2446

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309177	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	8	60	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t+f++eql+ Le++F + p+ ++ LAkklgL++rqV +WFqN+Ra+ k 678309177 8 KTRFSHEQLRSLETAFTAEERPDSGMKLGLAKKLGLETRQVAIWFQNQRARSK 60 79*************************************************98 PP
2	HD-ZIP_I/II	94.9	8.6e-31	8	97	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k r+s+eq+++LE+ F++ee+ ++ K la++Lgl++rqva+WFqn+RAR k +q+E+d ++Lk++yd+l+ + L+ke++ L +++ 678309177 8 KTRFSHEQLRSLETAFTAEERPDSGMKLGLAKKLGLETRQVAIWFQNQRARSKGRQMERDLDVLKSNYDHLVLGFQDLRKENQLLLLQVQ 97 89*********************************************************************************9988877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.985	2	62	IPR001356	Homeobox domain
SMART	SM00389	4.3E-14	4	66	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-17	7	73	IPR009057	Homeodomain-like
Pfam	PF00046	7.9E-17	8	60	IPR001356	Homeobox domain
CDD	cd00086	8.74E-14	8	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.7E-19	8	68	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	37	60	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.5E-11	63	103	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MPTLTSMKTR FSHEQLRSLE TAFTAEERPD SGMKLGLAKK LGLETRQVAI WFQNQRARSK 60 GRQMERDLDV LKSNYDHLVL GFQDLRKENQ LLLLQVQRLR EMEEDDSKNH RTSGARENPG 120 FLGEPSSEMV EAKYHLDAGC YLHEGSFGDG CSFQTHDSQW WDF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309177

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012842101.1	2e-35	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
Swissprot	P46897	1e-24	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2G9GG26	2e-43	A0A2G9GG26_9LAMI; Uncharacterized protein
STRING	Migut.E00626.1.p	9e-35	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10273	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	6e-17	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]