PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309225

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 259aa MW: 28022.9 Da PI: 8.921

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309225	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.8	6.8e-28	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a ++ r+++++sl+yeA+ r+ dP++G+vg++ +++++ +q +++++ 678309225 4 SCNGCRVLRKGCSDKCTIRPCLewirsPEAQANATVFLAKFYGRAGLVNLINAGAPNLRPAILKSLLYEACGRIVDPISGSVGLLCSGTWKRCQDAVDAV 103 6***********************************************************************************************9999 PP DUF260 96 llke 99 l+++ 678309225 104 LAGS 107 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.973	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-22	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDKCT IRPCLEWIRS PEAQANATVF LAKFYGRAGL VNLINAGAPN 60 LRPAILKSLL YEACGRIVDP ISGSVGLLCS GTWKRCQDAV DAVLAGSPIT DIVAPDESDT 120 APPLKLPYDI RHVSNKDRDG TGLNQLQSRR KFKRSGKKRA RVSGSSEERS PSHHGSSLSH 180 QSAAPAETNA QRGSSSSRDS ACPSSSETHV ADPDDRQIDL NLTLGLEPVK RCVKHRDLPL 240 DGDAAGLHKM ELRLQLPMC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309225

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099556.1	2e-89	LOB domain-containing protein 41
Swissprot	Q9M886	4e-74	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A022RX57	4e-85	A0A022RX57_ERYGU; Uncharacterized protein
STRING	Migut.H00213.1.p	7e-86	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-74	LOB domain-containing protein 41