PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678309765

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 396aa MW: 45811.9 Da PI: 5.8699

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678309765	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.1	7.1e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r e+ s rqvt+ kRr+gilKKA+E+SvLCd+++ +++fs+tgk 678309765 10 RLESLSSRQVTYGKRRAGILKKAQEISVLCDIDIILLMFSPTGK 53 678999************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.619	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.9E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-17	12	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGRVKLKIQR LESLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ 60 RSNIDEMITK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQSR 120 LRMLQNELAE VHQRLSWWTN PDKIVDMEHL NQMENSLKES LDRTRLHKQE KFFNDPIAPF 180 DCTNHFQNAM NFATTSDQDF QNQSWIPCDE SQQQLLLPNE SQIFTNRDME CSGGTPFPPY 240 TSYFSDMDLG GHELDSTRPL KNGEQDGISI EDYACSSHLK LPPIYDQFTF HSFGNLSFHD 300 LLEPGREMNL QPGLMDYQIT TSFELPRPVY DSLPHSLIPT TGPCAVSMFN DTSFTQRKAG 360 RQPPSQPLES YPSLVFRFLR QALDKLQKNF IMYTII

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGRVKLKIQR LESLSSRQVT YGKRRAGILK KAQEISVLCD IDIILLMFSP TGKPSIFRGQ  60
RSNIDEMITK YAQLTPKERA KRRLESLETL KRNFKKLDQD VDIEEFLDAS TPSIEEMQSR  120
LRMLQNELAE VHQRLSWWTN PDKIVDMEHL NQMENSLKES LDRTRLHKQE KFFNDPIAPF  180
DCTNHFQNAM NFATTSDQDF QNQSWIPCDE SQQQLLLPNE SQIFTNRDME CSGGTPFPPY  240
TSYFSDMDLG GHELDSTRPL KNGEQDGISI EDYACSSHLK LPPIYDQFTF HSFGNLSFHD  300
LLEPGREMNL QPGLMDYQIT TSFELPRPVY DSLPHSLIPT TGPCAVSMFN DTSFTQRKAG  360
RQPPSQPLES YPSLVFRFLR QALDKLQKNF IMYTII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_B	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_C	2e-14	1	92	1	90	MEF2 CHIMERA
6byy_D	2e-14	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678309765

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071694.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-74	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A022R6G6	1e-175	A0A022R6G6_ERYGU; Uncharacterized protein
STRING	Migut.I00190.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7640	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-77	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]