PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678310540

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 147aa MW: 16265.5 Da PI: 6.4805

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678310540	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	100	116	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp C k+F+r nL+ 678310540 100 FSCPLCFKTFNRYNNLQ 116 89************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MMRDQATWFN FLPLHSTATS IQSRGSFLSL QDSHGETDLQ IGLPCQQQAS DQGSRVSSDD 60 QTAEKDGVDI LSGLPLNKLN MGGQYWIPTP SQILIGPTQF SCPLCFKTFN RYNNLQVRSL 120 MNGICPRLLC VFWGDLIISG TGNVPIR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678310540

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087571.1	3e-25	zinc finger protein WIP2-like
Refseq	XP_029129760.1	2e-25	zinc finger protein WIP2-like
TrEMBL	A0A4D8XQ48	5e-27	A0A4D8XQ48_SALSN; Uncharacterized protein
STRING	AET02178	1e-24	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15659	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-20	C2H2 family protein