PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678310636
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 230aa    MW: 25469.6 Da    PI: 4.624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678310636genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-101482014195
                TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3  41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 +g++W v ++  ++  r++ + +Wk+F k+ngL  gD +vF+l+++s ++  +k
  678310636 148 YHGKTWHVMCNTHGSLPRFYCA-NWKSFLKENGLLPGDALVFELMESSVAKVEFK 201
                58********777777778888.********************996655544433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-11111206IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-12111206IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-12112206No hitNo description
PfamPF023624.7E-8148203IPR003340B3 DNA binding domain
PROSITE profilePS508639.982149208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MANVSSGSSS SANAVYDAES VKEPSLVLEI APRRMKTRST VNYQKFEGKK DNLDIDSSTE  60
SEGAEGGEEE EGKSNEVAQP STDSEEEPKD CSDKIGDTGI DEDEPPYLTG KPRFDVVLEP  120
RHLSKPLYIS KKIRQLLPCA EMPFALRYHG KTWHVMCNTH GSLPRFYCAN WKSFLKENGL  180
LPGDALVFEL MESSVAKVEF KVQILRCDVP PELLAYVGSH GEPTNPISID
Cis-element ? help Back to Top
SourceLink
PlantRegMap678310636
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154