PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678311240

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

ERF

Protein Properties

Length: 182aa MW: 20466.4 Da PI: 10.5836

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678311240	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.9	5e-18	77	127	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp ng +r++lg++ ta+eAa a+++a+ +++g 678311240 77 HFRGVRQRP-WGKFAAEIRDPARNG--ARVWLGTYETAKEAALAYDRAAYRIRG 127 69*****.******97676..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.1E-30	76	136	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.248	77	135	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-22	77	137	IPR016177	DNA-binding domain
Pfam	PF00847	5.4E-13	77	127	IPR001471	AP2/ERF domain
CDD	cd00018	1.28E-26	77	136	No hit	No description
SMART	SM00380	2.6E-34	77	141	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-10	78	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-10	101	117	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKPAATHRSW SMVPCLTENW GELPLRVNDS EDMVIYGLLT DAVRNGWMPF NDVVKPEPPE 60 FVAPPPPPRV AAPKGRHFRG VRQRPWGKFA AEIRDPARNG ARVWLGTYET AKEAALAYDR 120 AAYRIRGCKA LLNFPHEIGS NQPEPFRITP ALARRRSTAG SKQGRQSTEI FRLNGVSSDY 180 KI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-34	74	142	2	70	ATERF1
3gcc_A	3e-34	74	142	2	70	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:10792818, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678311240

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269\|PubMed:10652129, ECO:0000269\|PubMed:12090623, ECO:0000269\|PubMed:7756828, ECO:0000269\|Ref.2}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076437.2	1e-71	LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2-like
Swissprot	Q40479	6e-70	ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBL	A0A2G9FVK0	2e-71	A0A2G9FVK0_9LAMI; Uncharacterized protein
STRING	Migut.F00528.1.p	3e-69	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4054	22	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17500.1	8e-54	ethylene responsive element binding factor 1

Publications ? help Back to Top
Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells. Plant Cell Physiol., 2006. 47(4): p. 554-8 [PMID:16452120]