PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678312469
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family B3
Protein Properties Length: 829aa    MW: 92054.7 Da    PI: 7.0933
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678312469genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19382481198
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     +  ++++gD+v+F++++  +++lv++ 
  678312469 382 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGTAIKVQDIKGNEWTFQFRFwpNNNSRMYVLE-GVTPCMQNMQVQAGDTVTFSRIE-PGGQLVIGC 479
                99**************************77788999****************9989999999***9.********************887.788788887 PP

                E- CS
         B3  97 fr 98 
                ++
  678312469 480 RK 481
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-20379480IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.6E-28379483IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-23380481No hitNo description
PfamPF023621.5E-16382481IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433382483IPR003340B3 DNA binding domain
SMARTSM010192.4E-21382482IPR003340B3 DNA binding domain
PROSITE profilePS5105013.949603653IPR011124Zinc finger, CW-type
PfamPF074961.2E-12608650IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MVSPVHSPKT PGRYPNPPEK VERQQKYGYD NFEGLEFDFS ACSSSRKEPF RTRSTINVID  60
HAKRKHIKAQ NWSSFNRIDE KTDDIFADYE DFHDICKSSR DIWNGLFLSK VNVEGASREE  120
SSSAWLVVVS GEARMILSLH CNSLSLYENS LFCETFHLEE SGWRKCRICG KMPGQIFNCS  180
IPSNGVGDCT AVGGGADDEK FAERLLQLTR AIGSFDMNSG LDEIQKEDSI LNNKENNSVI  240
PSIVQGSSAG LLEPDNSTKK EGVGESFDST AQPSQNFPLM APFGCPSPVT HLFSGIIEGS  300
NLEKGSFQWG QKAPHKPSKP LKPSQKPGVE TSKLVRSQKR APRPPAEGQY RNHLLPRYWP  360
RITDQELQQL SGDLKSTIVP LFEKVLSASD AGRIGRLVLP KACAEAYFPP INQSEGTAIK  420
VQDIKGNEWT FQFRFWPNNN SRMYVLEGVT PCMQNMQVQA GDTVTFSRIE PGGQLVIGCR  480
KATHNSEDFA MNSLQNAGAL GETSILGDSE IPLSNGDKAS ADSLQHHMMA CEKAKSKKVK  540
KKRPLLPSDV AMELRITWEE AQGLLRPSPT SIPSITMVEN HEFQEYEEPP ILGKKTIFST  600
GPRGDPEQWA QCDSCLRWRR LPVHALLSAK WTCSENIWDK KRSSCSAPEE ISPRKAEPTV  660
GSYNEPKKQK FSDKRERREE EPSGLDALAN AAVLGEAVDT SSGATTRHPR HRPGCSCIVC  720
IQPPSGKGKH EPSCKCTVCN TVRRRFKTMQ SRKKQQQQQP PDREPEVSPQ ANAHHVLSGG  780
PSDVEEASKC QLDLNIVPPR REDDAAEEEA AVSATPPLEP TEKKEVLLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-653604842126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1742753RRRFKTMQSRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678312469
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080654.20.0LOW QUALITY PROTEIN: B3 domain-containing transcription repressor VAL1
TrEMBLA0A2G9GBQ20.0A0A2G9GBQ2_9LAMI; Uncharacterized protein
STRINGMigut.D00818.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-165high-level expression of sugar-inducible gene 2