PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678312885
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 212aa    MW: 23231.1 Da    PI: 8.301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678312885genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+ +Ed  lv++v+++G+++W++I+++++ +R++k+c++rw + 
        678312885 12 KGPWSSDEDAALVKLVAEYGPRNWSLISAHIP-RRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding49.59.5e-1665108247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEd  +  a++  G++ W++Iar ++ gRt++ +k++w++ 
        678312885  65 SPFTPEEDAVIMAAHAVNGNR-WAAIARLLP-GRTDNAIKNHWHST 108
                      58*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.142762IPR017930Myb domain
SuperFamilySSF466891.15E-3010105IPR009057Homeodomain-like
SMARTSM007172.4E-161160IPR001005SANT/Myb domain
PfamPF002495.6E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-241365IPR009057Homeodomain-like
CDDcd001673.86E-151456No hitNo description
SMARTSM007175.9E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129421.60763113IPR017930Myb domain
CDDcd001671.87E-1066109No hitNo description
PfamPF002493.7E-1366107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2266112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEINGGGRER IKGPWSSDED AALVKLVAEY GPRNWSLISA HIPRRSGKSC RLRWCNQLSP  60
AVHHSPFTPE EDAVIMAAHA VNGNRWAAIA RLLPGRTDNA IKNHWHSTLK RKRSPGSGGS  120
SESGIKRQCS WASQEHDSYP GDETLQSGLN GADADDGLTL VLFPPRAEAD PTAETADTRF  180
MKTIKKIIAE EVRNCIRGLC ANIPCNLPQC QN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4091121104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678312885
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084888.11e-69transcription factor MYB1-like
SwissprotQ9SN126e-49MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A022RUN73e-63A0A022RUN7_ERYGU; Uncharacterized protein
STRINGMigut.F01484.1.p6e-64(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128831620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-51myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]