PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678313126

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WOX

Protein Properties

Length: 292aa MW: 32091.5 Da PI: 9.1621

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678313126	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.6e-16	18	78	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p +ee ++ k l ++ +++V++WFqNrR + ++ 678313126 18 RSRWTPKPEQILILESIFNSgMVNPPKEETIRIRKLLekfgSVGDANVFYWFQNRRSRSRR 78 89***************99***********************************997 PP
2	Wus_type_Homeobox	105.9	2.5e-34	17	80	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q 678313126 17 VRSRWTPKPEQILILESIFNSGMVNPPKEETIRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 80 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.21E-14	9	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.24	14	79	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	16	83	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-13	18	78	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-9	18	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:2.40.160.10	1.8E-15	224	291	IPR023614	Porin domain
Pfam	PF01459	7.8E-10	224	284	IPR027246	Eukaryotic porin/Tom40

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055085	Biological Process	transmembrane transport
GO:0005741	Cellular Component	mitochondrial outer membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEEEAAAHPP PSAPPPVRSR WTPKPEQILI LESIFNSGMV NPPKEETIRI RKLLEKFGSV 60 GDANVFYWFQ NRRSRSRRRQ RQIQAARENP ENKPAFGGYP PDLLSNYCPV NFGPSSSFRT 120 DADAFHFPDS HGVFPENSSS LRLPQQETMT VFINGVATEV GRGPVDFAAA FGGGLLLVHS 180 SGTAVPVNEY GLLTESLKHG ESYFLCASLA CRLNNTSAGC VMIANQNNTS FGIQHPLNPL 240 AAVKAKFNKS GKVAALIQYE FQPNSLVTLS TELDTKFIDK IPKFGLALAL RK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678313126

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069976.1	5e-60	WUSCHEL-related homeobox 11-like
Swissprot	Q8GY25	3e-49	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A4D9AQL0	2e-63	A0A4D9AQL0_SALSN; Uncharacterized protein
STRING	Gorai.007G346300.1	3e-55	(Gossypium raimondii)
STRING	POPTR_0019s05730.1	2e-55	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	3e-32	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]