PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678313240

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 210aa MW: 23174.1 Da PI: 8.7585

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678313240	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.8	4.6e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++ ++++q+ + +ae++ 678313240 4 SCNGCRVLRKACSENCTIRPCLqwirsPDSQANATVFLAKFYGRAGLTNLINAGPPHLRPAIFRSLLYEACGRIVNPIYGSVGLYESGSWQVVHDAAEAV 103 6***********************************************************************************************9998 PP DUF260 96 llke 99 l+++ 678313240 104 LRGA 107 8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.643	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MRVSCNGCRV LRKACSENCT IRPCLQWIRS PDSQANATVF LAKFYGRAGL TNLINAGPPH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLYES GSWQVVHDAA EAVLRGAPIP TDGAGFAKAC 120 DIRHVCKEDN YHALNRVRSR RRFKRTANSA QVSSHSSSPM SDHHHHYHHS DAAETDIKLQ 180 RDIQSSSDPA AFSDGDLRNA EIHLNLTLGL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678313240

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024983995.1	7e-76	LOB domain-containing protein 41-like
Swissprot	Q9M886	4e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2G9HGD5	2e-75	A0A2G9HGD5_9LAMI; Uncharacterized protein
TrEMBL	A0A2R6RYF4	1e-75	A0A2R6RYF4_ACTCH; LOB domain-containing protein
STRING	XP_010693111.1	7e-74	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-69	LOB domain-containing protein 41