PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678313631
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 423aa    MW: 46286.5 Da    PI: 9.4226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678313631genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-1899146148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+d+++q+G g+W++ +   g++R++k+c++rw +yl
        678313631  99 KGPWTPEEDQKLLDYIEQHGHGSWRALPGNAGLRRCGKSCRLRWTNYL 146
                      79********************************************97 PP
2Myb_DNA-binding55.71.2e-17152197148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
        678313631 152 RGKFTSQEDQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 197
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2590149IPR009057Homeodomain-like
PROSITE profilePS5129417.99994146IPR017930Myb domain
SuperFamilySSF466896.97E-3196193IPR009057Homeodomain-like
SMARTSM007171.3E-1498148IPR001005SANT/Myb domain
PfamPF002491.4E-1699146IPR001005SANT/Myb domain
CDDcd001672.47E-11101146No hitNo description
PROSITE profilePS5129426.999147201IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-27150202IPR009057Homeodomain-like
SMARTSM007172.9E-17151199IPR001005SANT/Myb domain
PfamPF002491.3E-16152197IPR001005SANT/Myb domain
CDDcd001672.30E-12154197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MWRRESRSRP GSMETPKVIN EFSLSVTVTV TVAVAEYLLR VHLLHGCLPQ SDDFIAYGFG  60
ASKRRFSSNC IIVATQRIPS FFCIPMGRSP CCEKVGLKKG PWTPEEDQKL LDYIEQHGHG  120
SWRALPGNAG LRRCGKSCRL RWTNYLRPDI KRGKFTSQED QTIIQLHALL GNRWSAIATH  180
LPKRTDNEIK NYWNTHLKKR LIKMGIDPLT HKPKSNALLP DGRLAKNAAN LNHMAQWESA  240
RLEAEARLAS QSKLGSCSSA AQVAVMKKKP VESVPCLDML QAWDKATESA DGIVAGAGEI  300
ETPNSKNVHA RGAGGGARKS AVAGLNAGVA APAQSLHEQE ASHFTAMHLG KPSSSEHAPC  360
SNFVEKFTDL LLTASSGQRS FTADGSDSGN SGGGNAHYCE DNKNYWNTIL HFVNTSPSDS  420
PIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28972015108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678313631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098652.11e-139myb-related protein 306
SwissprotQ9LXF11e-117MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A059PRK41e-131A0A059PRK4_SALMI; MYB-related transcription factor
TrEMBLA0A328D8Q91e-131A0A328D8Q9_9ASTE; Uncharacterized protein
STRINGMigut.H00943.1.p1e-132(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-101myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]