PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678313764
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 744aa    MW: 83206.9 Da    PI: 9.579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678313764genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06213235326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                t++Cr f + G C+ Gd C+F+H 
  678313764 213 TVPCREFVK-GRCRWGDDCRFSHH 235
                79*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-4210236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009210237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5212235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5213235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906261287IPR000571Zinc finger, CCCH-type
SMARTSM003560.013262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MGDRRKRKSL WDVDEDPRNF SRMNEHGSWA GREPHHSHHD SRRYHNFSGS RGYSATKSRE  60
NTGQGYWEPV VEESGSLMKG LRQENGGETR YFQNMSPGFD RHFERSRSRS RSRSRTRGRS  120
HSRSLSRGRT SERERSRNRS RGNGGAMSQL RSHSPTGDSW KSSSWSDRRS VLGNASQEFK  180
DFSSGRSRKD SWESKDDPYR RGDERSPNRS SHTVPCREFV KGRCRWGDDC RFSHHVVSDE  240
NFGKGPGRNL SDMDIQHQSY RDTRPFCKFF AAGKCDRSNC RFSHEDSRIG ILEGRTAGAI  300
DDKGHDSRSG HGLENDDMSV EIPEWIPAPI RDTGFNGERA GASVPHIDKS SAKKLASPLE  360
GQLQSHERNR ETEVPDSLPE HAFAIKDWHQ NIAPGSLLRP ENPGAAERAA VGSYQSDFTS  420
ERKELKKTDL DVGRVLTQNS SSLNQANGTH SGYYPNPSNG FCANFSEANV THLNLLSQIQ  480
CNENAVQMAG ISAMKAPQLL PNSIGTLLTN VPAAIVDQNN HVAANHSTLP MQSIEKELPH  540
KNTVIDAKEI FGNSSLIDSA SAQSNLLSTT MENGSSRNSI MQQLQPSLIS NAGTGPAGVK  600
TDCLGSPEQK QEKESAKLES TELSRPKLEK REGDPEMKQS EAHDELGGYD DIVPNKDDKG  660
VRLFRNSLVE LVKDILRPTW KEGKLSREVH KTVVKKVVGK VTSTIQADHI PKTQDKIDQY  720
LKYSKTKITK LVQAYVGRSL KKDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RSRSRSRTR
2108118RSRSRSRTRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678313764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-12C3H family protein