PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678313982
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 267aa    MW: 28669.6 Da    PI: 10.4886
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678313982genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.2e-31167225259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK+ kg+++prsYYrCt+a gCpv+k+v+rsa d k++++tYeg+H h+
  678313982 167 SDGCQWRKYGQKMAKGNPYPRSYYRCTMAsGCPVRKQVQRSAGDAKILVTTYEGTHSHP 225
                7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31148227IPR003657WRKY domain
SMARTSM007741.2E-37166226IPR003657WRKY domain
SuperFamilySSF1182906.54E-27166227IPR003657WRKY domain
PROSITE profilePS5081129.562167227IPR003657WRKY domain
PfamPF031061.8E-27168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGCGGVEVS GKKPVIDAVS APAYRGAVPM GSNEGPGVTR RRNDGDIRAH ASPESAVNTT  60
LQLLSAGGVG NRSAKAKLDR LKSQVERLST ENAKLHGVLA ATTRSFEELQ RRISRGGPNG  120
LHQRKRELVN SNQGSPWTTE HIGDPIMRKP RVSVMTRSEA PMDQKVSDGC QWRKYGQKMA  180
KGNPYPRSYY RCTMASGCPV RKQVQRSAGD AKILVTTYEG THSHPLPLEA MAIASATTTA  240
SAMTVSGAMA STANTIMLPS TTAWQCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23154227877Probable WRKY transcription factor 4
2lex_A2e-23154227877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678313982
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494477.16e-50probable WRKY transcription factor 47 isoform X2
TrEMBLA0A1S2XU301e-48A0A1S2XU30_CICAR; probable WRKY transcription factor 47 isoform X2
STRINGXP_004494476.12e-46(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-42WRKY family protein