PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678314078
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22740 Da    PI: 10.49
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678314078genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.31.9e-181764249
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               rie++   + tfskRr g+ KKA+EL++LC+++v +iifs+t+  y +
  678314078 17 RIESQDDMYATFSKRRLGLYKKASELCTLCGVNVGIIIFSPTDAPYSF 64
               8****************************************9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-22867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.544868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-22978IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-141030IPR002100Transcription factor, MADS-box
CDDcd001203.77E-231367No hitNo description
PfamPF003191.7E-201764IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-143045IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-144566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSTGRRTRGR QRIPIQRIES QDDMYATFSK RRLGLYKKAS ELCTLCGVNV GIIIFSPTDA  60
PYSFFSPTME AALGRYRSPG TPGGERGGEA EGYCHARIQS CNVTLDAILD EKQRVRQREK  120
ALDDMAGTRR RGWWSQPVDS LRKEQVKEWI SWWSGFQGRL RKRMKELCNA PGTSSPNLAH  180
ALGHFFFLFF LDTISRILK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678314078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082025.15e-65proline-rich extensin-like protein EPR1 isoform X1
TrEMBLA0A022S1J22e-61A0A022S1J2_ERYGU; Uncharacterized protein
STRINGMigut.K00930.1.p5e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-31AGAMOUS-like 61