PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678315764
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 223aa    MW: 25126.4 Da    PI: 10.0684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678315764genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed +l ++++ +G g W++++++  ++R++k+c++rw++yl
        678315764 14 KGAWSKAEDAKLRNCIETYGEGKWHLVPSRAELNRCRKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding44.63.4e-1469111347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +++++E +ll+++ k+lG++ W++Ia +++ gRt++++k++w+++
        678315764  69 SFSEDEVDLLIRLQKLLGNR-WTLIAGRLP-GRTANDVKNFWNSH 111
                      79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.352961IPR017930Myb domain
SuperFamilySSF466891.65E-2611108IPR009057Homeodomain-like
SMARTSM007174.3E-131363IPR001005SANT/Myb domain
PfamPF002499.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-211568IPR009057Homeodomain-like
CDDcd001671.45E-91661No hitNo description
PROSITE profilePS5129421.99462116IPR017930Myb domain
SMARTSM007173.8E-1366114IPR001005SANT/Myb domain
PfamPF002494.8E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2069114IPR009057Homeodomain-like
CDDcd001671.21E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEGRAVSVSL GVRKGAWSKA EDAKLRNCIE TYGEGKWHLV PSRAELNRCR KSCRLRWLNY  60
LRPNLNRASF SEDEVDLLIR LQKLLGNRWT LIAGRLPGRT ANDVKNFWNS HQLKKAKAAE  120
KKTAAAAPEK KPENTTVFKP QPLRLSDVQK ACTCSDTPGK PNNTPQTHSI WNPGNMPASP  180
PSLGFFLDDG SNSWWWWGDL LGDNGDQTLN PPELFRSPDS LNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21141107102B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678315764
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019427402.12e-62PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV93e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061ENQ71e-59A0A061ENQ7_THECC; R2R3 MYB transcription factor splice variant 1
STRINGEOY039642e-60(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-51myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]