PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678317179
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 239aa    MW: 25594.8 Da    PI: 7.9798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678317179genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.7e-27121181259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                dDg+ WrKYGqKe++gs + rsYY+Ct++   +Cp+kk+v+r + dp+++ +tY g H+++
  678317179 121 DDGFIWRKYGQKEIHGSAHRRSYYKCTHQklyNCPAKKQVQRVDGDPSTLCVTYIGAHTCH 181
                8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-27114181IPR003657WRKY domain
SuperFamilySSF1182903.53E-25115182IPR003657WRKY domain
PROSITE profilePS5081120.013115183IPR003657WRKY domain
SMARTSM007746.0E-34120182IPR003657WRKY domain
PfamPF031061.5E-24121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDEALIWMSH GCAYVKKLEQ SLPNLVNQPA ALAASCDEIL RVFGYCKERL SCHALGDPRH  60
GAGGTNFTGN SETVPQLRPH SWEVHSRAGG SRNRTSGADG GGRVVVTMPA ITVRNGVAPP  120
DDGFIWRKYG QKEIHGSAHR RSYYKCTHQK LYNCPAKKQV QRVDGDPSTL CVTYIGAHTC  180
HLDSVAGQSA PVGLDHEAAS SVGCSAAVAP FNDDGLPVAY TMISSGINGM DSIFPPRGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18117180568OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678317179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D8ZKB25e-48A0A4D8ZKB2_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-37WRKY DNA-binding protein 55