PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678319789
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 233aa    MW: 25257.1 Da    PI: 7.3113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678319789genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-0596118123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C++C++ F+++  L  H++ H
  678319789  96 YECQYCSRGFPNSQALGGHQNAH 118
                99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.52E-693124No hitNo description
Gene3DG3DSA:3.30.160.606.2E-494122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.5E-695120IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.75996123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRHGNGCGED SARPTHHAFD LDLLHLLPPR QNTSESVGWI GVPCEENATA TCGASVEMNR  60
ETNYQGNSGR LKLFGVNVAE EIAASAESEA DDGRRYECQY CSRGFPNSQA LGGHQNAHKK  120
ERMLHKRAQI QAIRPNVQAG YNSPWVGVSR AREPFQVAHG WSFPGARGVG SVAYAGCVGD  180
SCFLRIGPKE AVKAHERGGL IGPSLNMFSR DGPNSDDVHG LDLHLRLAPT QPF
Cis-element ? help Back to Top
SourceLink
PlantRegMap678319789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076533.13e-48zinc finger protein GIS3
TrEMBLA0A068TWM21e-44A0A068TWM2_COFCA; Uncharacterized protein
STRINGXP_009621927.11e-43(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29941419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.12e-12C2H2 family protein