PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678320432
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 371aa    MW: 42655.1 Da    PI: 4.2388
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678320432genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix40.47.8e-13149227286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                Wt++e+  L++   ++  +l+r++l    W+ev++k+ +e ++er+  qC+++++ l+k+ykk+k  + +       ++ yf+q++
  678320432 149 WTEHETSILLNTWGDRYLKLGRKSLHSEEWQEVAEKVsQESKIERTDAQCRSRLDTLKKKYKKEKMKSCS-------KWEYFSQMD 227
                *************************************88999*********************9987775.......59******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.2E-20147229No hitNo description
PROSITE profilePS500906.226147206IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4148214IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVDDMDDKAY PSNSYGLTYQ KLSGENFSHP QNVANRFVSD DDEENEDDME EDEGGGNDDE  60
EDEEEEEEDE DEDEDDGSSG VQRIGKDGYK LRNYNDGADA DDDFGDMQKH PKKRKLKTLL  120
SNYVFAPRAP ASSSFQKPAH GGRDPSSDWT EHETSILLNT WGDRYLKLGR KSLHSEEWQE  180
VAEKVSQESK IERTDAQCRS RLDTLKKKYK KEKMKSCSKW EYFSQMDDLL SAPSQQQPSL  240
PCGVDAGEFI FMNPKVYLDR ANGLDEMRDS PENSESEEDE DMEDLSPRKA ASLKILADSI  300
HKFNEVYQKV ENSKRQQILE LEKMRMNFHR ELELQKKQIL ERAHAEIQKI RGEESDDDHD  360
DDEASGDNDS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114KHPKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678320432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072329.11e-120trihelix transcription factor ASIL1-like
RefseqXP_011072330.11e-120trihelix transcription factor ASIL1-like
TrEMBLS8CI611e-112S8CI61_9LAMI; Uncharacterized protein (Fragment)
STRINGcassava4.1_009108m1e-108(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72302431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-61Trihelix family protein