PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678320713
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 489aa    MW: 53521.2 Da    PI: 9.8396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678320713genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.4e-26436486151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                k+i+n   r+vtfskRr+g+lKKA ELS+LC+aevaviifs++g+ly y+s
  678320713 436 KKISNAAARHVTFSKRRQGLLKKARELSILCEAEVAVIIFSQSGNLYQYCS 486
                68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd096315.47E-1182217No hitNo description
PROSITE profilePS5083613.06783200IPR005018DOMON domain
PROSITE profilePS5093928.92216411IPR006593Cytochrome b561/ferric reductase transmembrane
CDDcd087601.33E-39217389No hitNo description
SMARTSM006656.4E-23254375IPR006593Cytochrome b561/ferric reductase transmembrane
PfamPF031886.5E-6255375IPR006593Cytochrome b561/ferric reductase transmembrane
SMARTSM004321.1E-36428487IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-25428488IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.002428488IPR002100Transcription factor, MADS-box
CDDcd002656.48E-33429488No hitNo description
PRINTSPR004047.9E-24430450IPR002100Transcription factor, MADS-box
PROSITE patternPS003500430484IPR002100Transcription factor, MADS-box
PfamPF003192.5E-23437484IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-24450465IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-24465486IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEEGGDGRRC KLGFIFFLVV SLGLTTSAGG ARDEEEVRRS CDRDLSLVLP YPYSSLPNMV  60
CRSLWNSYLL RVSVLLLNYV HDSGITPHLQ YSRSRSNELT IVVSTIYTSG WVGIGFSPDG  120
RMLNSSCMVA WVNGEGRGRI RQYKVNGLIP GEIKPDEGQL PLTNVPPYMA LSSATIYLAF  180
QLDLNRSPEH HITHLLLAFS TKNPHHLRLT LHDDKVSIGF DFSSGETKAS GAADSSSSSS  240
SSSSAAIVND MRTTHGALAI LGWAVFLPLG TIFARYLKKR EPLWYYLHVL IQFVGFLLGV  300
AAIVAGVSLN NILPVPVPTH KGVGVFILVL TILQVLAFFG RPSDGSKYRN CWSLAHHWMG  360
RVCLVMGGAN IVIGLHVAGA GTPWKAVCGM LVTSVLLAVV VLEVALRLER KRAKAAGAMQ  420
HHEMAVKMGR EKIEIKKISN AAARHVTFSK RRQGLLKKAR ELSILCEAEV AVIIFSQSGN  480
LYQYCSSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-16428487160MEF2 CHIMERA
6byy_B9e-16428487160MEF2 CHIMERA
6byy_C9e-16428487160MEF2 CHIMERA
6byy_D9e-16428487160MEF2 CHIMERA
6bz1_A9e-16428487160MEF2 CHIMERA
6bz1_B9e-16428487160MEF2 CHIMERA
6bz1_C9e-16428487160MEF2 CHIMERA
6bz1_D9e-16428487160MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678320713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093035.21e-148cytochrome b561 and DOMON domain-containing protein At3g61750
TrEMBLA0A4D9AV721e-134A0A4D9AV72_SALSN; Uncharacterized protein
TrEMBLS8DK711e-136S8DK71_9LAMI; Uncharacterized protein
STRINGMigut.N01544.1.p1e-151(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-23MIKC_MADS family protein