PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678323129

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NAC

Protein Properties

Length: 397aa MW: 44128.5 Da PI: 5.0432

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678323129	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.5e-50	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd elv++yLk+kv+gkkl++ e+i+ev+iy++ PwdLp +++k++++ew+fF++r+kkya+g r +rat++gyWk+tgk ++v + +g+ 678323129 6 LPPGFRFHPTDTELVMYYLKRKVTGKKLHF-EAIAEVNIYQFSPWDLPdmSCLKSKDREWFFFCPREKKYASGVRVKRATENGYWKTTGKGRPVSH-NGQ 103 79************************99.89**********9644889999**********************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+ ktLvf+ g++p+g++tdWv+heyr+ 678323129 104 IVGMVKTLVFHLGHSPNGRRTDWVIHEYRI 133 **************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-57	4	155	IPR003441	NAC domain
PROSITE profile	PS51005	54.579	6	155	IPR003441	NAC domain
Pfam	PF02365	4.2E-26	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MGKAFLPPGF RFHPTDTELV MYYLKRKVTG KKLHFEAIAE VNIYQFSPWD LPDMSCLKSK 60 DREWFFFCPR EKKYASGVRV KRATENGYWK TTGKGRPVSH NGQIVGMVKT LVFHLGHSPN 120 GRRTDWVIHE YRIVDKAIAS ADHLETYTLC KVFEKSGMGP KNGAQYGAPF NEAEWSDDED 180 EPVKIQSPAL ETQLPQCQGV PSLSAGQLST DVPVIENDHE IEHMLSHFTD DPIFSLDAAS 240 KQGAHVEAVK SHPSSDGFDL YDGLDDLDIH PRLNEDHLYL SGMHHENNEL NPLFLDEMGY 300 IELDDLMGPL TSSAEELLFG CYGANRFQQL NHQGTGLNQY PLSSAPLPPF PTGTMGTAGN 360 PELPQTTMPS TSGCYELLPA SNAATACGSE QLPPPQQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MGKAFLPPGF RFHPTDTELV MYYLKRKVTG KKLHFEAIAE VNIYQFSPWD LPDMSCLKSK  60
DREWFFFCPR EKKYASGVRV KRATENGYWK TTGKGRPVSH NGQIVGMVKT LVFHLGHSPN  120
GRRTDWVIHE YRIVDKAIAS ADHLETYTLC KVFEKSGMGP KNGAQYGAPF NEAEWSDDED  180
EPVKIQSPAL ETQLPQCQGV PSLSAGQLST DVPVIENDHE IEHMLSHFTD DPIFSLDAAS  240
KQGAHVEAVK SHPSSDGFDL YDGLDDLDIH PRLNEDHLYL SGMHHENNEL NPLFLDEMGY  300
IELDDLMGPL TSSAEELLFG CYGANRFQQL NHQGTGLNQY PLSSAPLPPF PTGTMGTAGN  360
PELPQTTMPS TSGCYELLPA SNAATACGSE QLPPPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-46	6	156	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250\|UniProtKB:Q9C8W9}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678323129

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022894871.1	1e-117	NAC domain-containing protein 82-like
Swissprot	Q9FY82	1e-81	NAC82_ARATH; NAC domain-containing protein 82
TrEMBL	S8E9C0	1e-118	S8E9C0_9LAMI; Nam-like protein 2
STRING	Migut.H00727.1.p	1e-113	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6050	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	2e-83	NAC domain containing protein 82

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Deeken R, et al. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J., 2008. 55(5): p. 746-59 [PMID:18485061] Ohbayashi I, et al. Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. Plant Cell, 2017. 29(10): p. 2644-2660 [PMID:28899981]