PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678323204
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 352aa    MW: 39000.1 Da    PI: 7.7551
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678323204genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07881021327
                S--TTTTT-SS-SSS CS
    zf-CCCH  13 GtCkyGdrCkFaHgp 27 
                GtCk+G++C+F+H+p
  678323204  88 GTCKFGSSCRFNHPP 102
                9************97 PP
2zf-CCCH30.94.7e-10124147326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 elC+ff+rtG+Ck+G+ C+++Hg
  678323204 124 KELCKFFSRTGWCKHGEGCRYSHG 147
                59*********************8 PP
3zf-CCCH28.72.3e-09173196427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                ++C +++ tG Ck+G +CkF H++
  678323204 173 AECAYYMSTGSCKFGMNCKFDHPE 196
                78********************96 PP
4zf-CCCH27.17.1e-09249275127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+ff +tG Ck+ + CkF+H++
  678323204 249 PGEPECSFFVKTGDCKFKSACKFHHPK 275
                5799*********************96 PP
5zf-CCCH30.65.8e-10318343126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ++++ C +++r G+CkyG +C++ H+
  678323204 318 PGQPVCTHYYRHGICKYGLSCTYDHS 343
                5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561182102IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.77987103IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-588102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.366121149IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-4122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6124149IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7124147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6125148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.793169197IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4169196IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-8173196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5174196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5175195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281248276IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4248275IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6250275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394317345IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4317344IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7319343IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001322343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MELIHHFFEL QRSFQRNKVV ENDAPSIEVA DAGKQSEDDS RDDKDLRGSI MRELQDLAIK  60
KSETQTADQG VSADGVWGWD DDPNGCRGTC KFGSSCRFNH PPRKNQFANE GRRYRDNPEK  120
TGEKELCKFF SRTGWCKHGE GCRYSHGSDK SVAPQSQITE LNSSGYPIRP IEAECAYYMS  180
TGSCKFGMNC KFDHPELAAG ARGSSASSNS APQAARVKPE LGSQTSSSSE CTEKKKQHNT  240
SVEEYPERPG EPECSFFVKT GDCKFKSACK FHHPKNLTYK PKTKRDAPSS SNTTFRPQMN  300
AAGADAPALN DKGLPIRPGQ PVCTHYYRHG ICKYGLSCTY DHSLTSDTAS GE
Cis-element ? help Back to Top
SourceLink
PlantRegMap678323204
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072924.12e-68zinc finger CCCH domain-containing protein 67 isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.24e-35C3H family protein