PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678323648

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 326aa MW: 38208.9 Da PI: 4.9841

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678323648	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.5	5.3e-16	68	125	1	58
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 +W++qe+++ ie++ ++e +++ + ++k lWe v+++mrerg+ r+p qCk kw+ l+ 678323648 68 EWSNQEIRDFIEIKAQLEWDFSVADRNKDLWETVANRMRERGYLRTPDQCKGKWKFLK 125 5*****************************************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-12	68	125	No hit	No description
PROSITE profile	PS50090	6.829	69	125	IPR017877	Myb-like domain
CDD	cd12203	1.57E-15	69	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MYNSAGNADG HFSSPGSSGS IRYPVQRRQV YQPVMVPVPP PPSRMFFSAS RDGDDDADFP 60 FRDDGFPEWS NQEIRDFIEI KAQLEWDFSV ADRNKDLWET VANRMRERGY LRTPDQCKGK 120 WKFLKGPDIP LDDGQQSLFY DEMPSVSCVR TTGMAQQHAL ESEMVPSTDE RRTNKVPGNQ 180 WNEECSVEEE DIMAAEAETV PRKKVRKQKQ PKSVESSCML IPTPLDASND GGFIRSIQEI 240 MRRFIQQQKD IDMQWRKRME KQAEERELFE QEWRQKMETL EREKLMVEKT QSEREERRRV 300 REEIRAEKRD VLLTALLNKL IKDDTS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678323648

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	8e-16	Trihelix family protein