PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678324417
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 216aa    MW: 24315.4 Da    PI: 11.0478
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678324417genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind78.98.3e-251776261
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg 61
                  Fl+k+y++++d+++++++sw  +g +fvv+++ efa+++Lp+yFkhsnf+SFvRQLn+Y 
     678324417 17 FLMKTYQLVDDPATDHIVSWGGTGATFVVWKPPEFARDLLPNYFKHSNFSSFVRQLNTYK 76
                  9**********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.8E-27977IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-2713207IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-151740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-201776IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.67E-231776IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.1E-155567IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-156880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGTDLILESQ RSVPGPFLMK TYQLVDDPAT DHIVSWGGTG ATFVVWKPPE FARDLLPNYF  60
KHSNFSSFVR QLNTYKRVQA SAGGDPPEED RGVSGAILLR RASEGGKLGF AVGRQRLPPD  120
DRRVLRRSPG RQPTPEKKQQ HPPLRAGPHE ATLQRDPTPF PQPRETKSQK LRPDESGHRI  180
GRTRRPRFPP DSTLRSSIVF QKEDSRRMEG EGRTGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-1512901697Heat shock factor protein 1
5hdg_A1e-1517901087Heat shock factor protein 1
5hdn_A1e-1517901087Heat shock factor protein 1
5hdn_B1e-1517901087Heat shock factor protein 1
5hdn_C1e-1517901087Heat shock factor protein 1
5hdn_D1e-1517901087Heat shock factor protein 1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678324417
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-37heat shock transcription factor B4