PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678324956
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 283aa    MW: 30409.9 Da    PI: 8.4973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678324956genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11205250655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  678324956 205 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKCLQ 250
                689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.967199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-15202264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-10203254No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13204262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MYQSSAASSS QSAGAFLASA PRRRSDKCES SAVMSNHGDD GGSVANTTIG LRPSFGFSAT  60
PCSSPPDIAR HSSSPAVFFL NPSAADKNGG FSLTREGCSS KGMGDGGGSG SRLSFNGSES  120
LTGVSDHEHE QMKMHHCNKY QPLVDPILFS IAQRADGVDP HSQIQFGLSQ SSMGMASNSN  180
LLNTPPDSVP CKMRAKRGCA THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYADMLD  240
LAVQHIKCLQ TQVQKLNDDL EGCSCGSNRN KNQLQQLLHY KEN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678324956
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566304.15e-63PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1027e-47BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0H3YBT21e-77A0A0H3YBT2_SALMI; Basic helix-loop-helix transcription factor
STRINGPGSC0003DMT4000167931e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.23e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]