PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678325294

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 156aa MW: 16419.5 Da PI: 7.8128

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678325294	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F ++ L H++ H 678325294 41 YECQYCHREFANSQALGGHQNAH 63 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.06E-6	39	68	No hit	No description
Pfam	PF13912	6.2E-6	40	65	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.4E-4	41	77	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.926	41	68	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MGGVGCDFDR KACKTSGKLK LFGFHVDGDG GGATPEDCRR YECQYCHREF ANSQALGGHQ 60 NAHKKERQKL KKAARSASVV PPTPSGAVVV PATALPAPSW VYIPRATPAF QVPCAGGEVG 120 FLWSDVGVGP GPTVEARDED DGVQLDLQLG LARASP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269\|PubMed:25640859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678325294

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009621927.1	2e-31	PREDICTED: zinc finger protein 6-like
Refseq	XP_016489115.1	2e-31	PREDICTED: zinc finger protein 6
Refseq	XP_019233290.1	2e-31	PREDICTED: zinc finger protein 6
Swissprot	Q9C9H1	2e-19	GIS3_ARATH; Zinc finger protein GIS3
TrEMBL	A0A2G2VK66	2e-30	A0A2G2VK66_CAPBA; Zinc finger protein 8
STRING	XP_009621927.1	8e-31	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2994	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58070.1	6e-12	C2H2 family protein

Publications ? help Back to Top
Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859]